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You can run MUSCLE alignments in a Connections Session for a group of sequences. The results can be viewed as the aligned sequences or visualized using a Phylogram. Different channels can be set up to use different parameters. Sequences can be added to an existing session, so that the different rows look at different groups of sequences. Runs on the different channels and rows can then be compared.
Most of the time you will use Assembly Automatically, select the sequences, click the button, and Sequencher does the rest.
Visualize the results using the Variance Table and its powerful reports.
Validating mtDNA profiles allows you to compare the results of separate analysts and ensure quality remains high in your lab. With this feature, you can take two contigs, compare them,
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